Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cardiovascular
Cell type
Coronary artery cells
NA
NA

Attributes by original data submitter

Sample

sample type
tissue
tissue
coronary artery
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO793LXB
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/cc0fee99-edee-480d-a7ce-887b4910f895/@@download/attachment/Tissue%20ChIP-Seq%20Biorupter%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
41295371
Reads aligned (%)
97.2
Duplicates removed (%)
47.0
Number of peaks
27895 (qval < 1E-05)

hg19

Number of total reads
41295371
Reads aligned (%)
96.4
Duplicates removed (%)
47.5
Number of peaks
27172 (qval < 1E-05)

Base call quality data from DBCLS SRA