ChIP-Atlas: SRX5457329

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: TFs and others
Antigen: CTCF

Cell type

Cell type Class: Cardiovascular
Cell type: Coronary artery cells
NA: NA

Attributes by original data submitter

Sample

sample type: tissue
tissue: coronary artery
sex: female
dev_stage: adult
age: 53 year
donor ID: ENCDO793LXB
lab: Michael Snyder, Stanford

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: general protocol: https://www.encodeproject.org/documents/cc0fee99-edee-480d-a7ce-887b4910f895/@@download/attachment/Tissue%20ChIP-Seq%20Biorupter%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model: Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 41295371
Reads aligned (%): 97.2
Duplicates removed (%): 47.0
Number of peaks: 27895 (qval < 1E-05)

hg19

Number of total reads: 41295371
Reads aligned (%): 96.4
Duplicates removed (%): 47.5
Number of peaks: 27172 (qval < 1E-05)

Base call quality data from DBCLS SRA